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R inferCNV 安裝報錯: rjags R 安裝報錯 automatic detection of JAGS failed. Please use pkg-config to locate the JAGS

JAGS


1.首先安裝依賴的 JAGS

tar zxvf JAGS-4.3.0.tar.gz

./configure --prefix=/share/work/biosoft/JAGS/JAGS-v4.3.0



2.設置環境變量:


export JAGS_PREFIX=/share/work/biosoft/JAGS/JAGS-v4.3.0

export JAGS_LIBDIR=$JAGS_PREFIX/lib

export JAGS_INCLUDEDIR=$JAGS_PREFIX/include

export LD_LIBRARY_PATH=/share/work/biosoft/JAGS/JAGS-v4.3.0/lib/:$LD_LIBRARY_PATH

3.安裝 rjags
install.packages('rjags', configure.args='--with-jags-include=/share/work/biosoft/JAGS/JAGS-v4.3.0/include/JAGS --with-jags-lib=/share/work/biosoft/JAGS/JAGS-v4.3.0/lib/JAGS? --with-jags-modules=/share/work/biosoft/JAGS/JAGS-v4.3.0//lib/JAGS/modules-4? --with-jags-bin=/share/work/biosoft/JAGS/JAGS-v4.3.0//bin')

4.安裝inferCNV
BiocManager::install("infercnv")

  • 發表于 2022-03-29 17:17
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